PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05777.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 119aa    MW: 13167.6 Da    PI: 8.4514
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05777.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.38.1e-1367115155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+ ++ a +k++g
  Rsa1.0_05777.1_g00002.1  67 SKFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAASYDVAVRKFRG 115
                              79****9888.8*********3.....5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.42E-2167119No hitNo description
PfamPF008472.8E-767115IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1467118IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-1768118IPR001471AP2/ERF domain
SMARTSM003805.2E-1768119IPR001471AP2/ERF domain
PROSITE profilePS5103217.88668119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MDYSCLDDNT SNNNNTSETL SMSTKKTPSP PPPALRLYRM GSGGSSVVLD LENNGVETES  60
RKKLPSSKFK GVVPQPNGRW GAQIYEKHQR VWLGTFNEEE EAAASYDVAV RKFRGRDAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622296.14e-63PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1
RefseqXP_013657185.14e-63PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like
SwissprotQ9C6M57e-56RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A078GG813e-63A0A078GG81_BRANA; BnaCnng04580D protein
TrEMBLA0A0D3BI424e-63A0A0D3BI42_BRAOL; Uncharacterized protein
STRINGBra011002.1-P3e-58(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2394033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-49RAV family protein